Item 1A. Risk Factors 38
Item 1B. Unresolved Staff Comments 62
Item 1C. Cybersecurity 62
Item 2. Properties 63
Item 3. Legal Proceedings 63
Item 4. Mine Safety Disclosures 63
Item 6. Reserved 65
Item 7A. Quantitative and Qualitative Disclosures About Market Risk 75
Item 8. Financial Statements and Supplementary Data 76
Item 9A. Controls and Procedures 77
Item 9B. Other Information 77
Item 9C. Disclosure Regarding Foreign Jurisdictions that Prevent Inspections 77
PART III 78
Item 10. Directors, Executive Officers and Corporate Governance 78
Item 11. Executive Compensation 78
Item 14. Principal Accountant Fees and Services 78
Item 15. Exhibits and Financial Statement Schedules 78
Signatures 80
i
CAUTIONARY
NOTICE
This
annual report on Form 10-K contains forward-looking statements within the meaning of Section 27A of the Securities Act of 1933, as amended,
and Section 21E of the Securities Exchange Act of 1934, as amended. Those forward-looking statements include our expectations, beliefs,
intentions and strategies regarding the future.
These
and other factors that may affect our financial results are discussed more fully in “Risk Factors” and “Management’s
Discussion and Analysis of Financial Condition and Results of Operations” included in this report. Moreover, we operate in a very
competitive and rapidly changing environment, and new risks emerge from time to time. It is not possible for us to predict all risks,
nor can we assess the impact of all factors on our business or the extent to which any factor, or combination of factors, may cause actual
results to differ materially from those contained in any forward-looking statements we may make. In light of these risks, uncertainties
and assumptions, the forward-looking events and circumstances discussed in this report may not occur and actual results could differ
materially and adversely from those anticipated or implied in our forward-looking statements. Although we believe that the expectations
reflected in our forward-looking statements are reasonable, we cannot guarantee that the future results, levels of activity, performance
or events and circumstances described in the forward-looking statements will be achieved or occur. Moreover, neither we nor any other
person assumes responsibility for the accuracy and completeness of the forward-looking statements. We caution readers not to place undue
reliance on any forward-looking statements. We do not undertake, and specifically disclaim any obligation, to update or revise such statements
to reflect new circumstances or unanticipated events as they occur, and we urge readers to review and consider disclosures we make in
this and other reports that discuss factors germane to our business. See in particular our reports on Forms 10-K, 10-Q, and 8-K subsequently
filed from time to time with the Securities and Exchange Commission.
Except
as otherwise indicated, all share and share price in this report gives effect to a forward stock split effected on May 17, 2023 at a
ratio of one for 7.1 for one.
INDUSTRY
AND MARKET DATA
This
report, particularly the section “Business,” contains observations, statistical data, estimates, and forecasts that are based
on independent industry, government and non-government organization publications or other publicly available information, as well as
other information based on our internal sources. Although we believe that the third-party sources referred to in this report are reliable,
estimates as they relate to projections involve numerous assumptions, are subject to risks and uncertainties, and are subject to change
based on various factors, including those discussed under the section titled “Risk Factors” and elsewhere in this
report. These and other factors could cause results to differ materially from those expressed in the estimates made by the independent
parties and by us.
Certain
information in the text of this report is contained in independent industry government and non-governmental organizational publications.
The sources of these publications are provided below:
● Orphanet, Netherton Syndrome, Orphanet: Netherton syndrome
ii
RISK
FACTOR SUMMARY
Our
business is subject to numerous risks and uncertainties, including those described in “Risk Factors” in this Annual Report
on Form 10-K. These risks include, but are not limited to the following:
● We currently have no sales and marketing organization;
● Our business may suffer with the loss of key personnel;
● An active, liquid and orderly trading market for our shares may not develop;
● The market price of our shares may be subject to fluctuation and volatility;
iii
PART
I
Item
1. Business
Background
Azitra,
Inc. was formed as a Delaware corporation on January 2, 2014 for the purpose of developing innovative therapies for precision dermatology
using engineered proteins and topical live biotherapeutic products. Since our formation, we have built a proprietary platform that includes
a microbial library comprised of approximately 1,500 unique bacterial strains that can be screened for unique therapeutic characteristics.
The platform is augmented by an artificial intelligence and machine learning technology that analyzes, predicts and helps screen our
library of strains for drug like molecules. The platform also utilizes a licensed genetic engineering technology, which can enable the
transformation of previously genetically intractable strains. We have not commenced commercial operations. Unless otherwise indicated,
the terms “Azitra,” Company,” “we,” “us,” and “our” refer to Azitra, Inc. and its
wholly-owned subsidiaries.
Overview
We
are an early-stage clinical biopharmaceutical company focused on developing innovative therapies for precision dermatology using engineered
proteins and topical live biotherapeutic products. We have built a proprietary platform that includes a microbial library comprised of
approximately 1,500 unique bacterial strains that can be screened for unique therapeutic characteristics. The platform is augmented by
an artificial intelligence and machine learning technology that analyzes, predicts and helps screen our library of strains for drug like
molecules. The platform also utilizes a licensed genetic engineering technology, which can enable the transformation of previously genetically
intractable strains. Our initial focus is on the development of genetically engineered strains of Staphylococcus epidermidis, or
S. epidermidis, which we consider to be an optimal therapeutic candidate species for engineering of dermatologic therapies. The
particular species demonstrates a number of well-described properties in the skin. As of the date of this report, we have identified,
among our microbial library, over 60 distinct bacterial species that we believe are capable of being engineered to create living organisms
or engineered proteins with significant therapeutic effect.
We
are a pioneer in genetically engineering bacteria for therapeutic use in dermatology. Our goal is to leverage our platforms and internal
microbial library bacterial strains to create new therapeutics that are either engineered living organisms or engineered proteins or
peptides to treat skin diseases. Our initial focus is on the development of our current product candidates, including:
We
also have established partnerships with teams from Carnegie Mellon University and the Fred Hutchinson Cancer Center, or Fred Hutch, two
of the premier academic centers in the United States. Our collaboration with the Carnegie Mellon based team takes advantage of the power
of whole genome sequencing. This partnership is mining our proprietary library of bacterial strains for novel, drug like peptides and
proteins. The artificial intelligence/machine learning technology developed by this team predicts the molecules made by microbes from
their genetic sequences. The system then compares the predictions to the products actually made through tandem mass spectroscopy and/or
nuclear magnetic resonance imaging to refine future predictions. The predictions can be compared to publicly available 2D and 3D protein
databases to select drug like structures.
We
hold an exclusive, worldwide license from Fred Hutch regarding the use of its patented SyMPL technologies for all fields of genetic engineering,
including to discover, develop and commercialize engineered microbial therapies and microbial-derived peptides and proteins for skin
diseases. We are utilizing our licensed patent rights to build plasmids that in order to make genetic transformations that have never
been previously achieved. Our collaboration with Fred Hutch is led by Dr. Christopher Johnston, an expert in microbial engineering, and
the innovator behind the SyMPL technology.
Beyond
our three lead product candidates and collaboration with Bayer, our goal is to develop a broad portfolio of product candidates focused
on expanding the application of our platforms for precision dermatology. We believe that we have established a unique position in advancing
the development of biologics for precision dermatology.
Our
Business Strategies
We
intend to create a broad portfolio of product candidates for precision dermatology through our development of genetically engineered
proteins selected from our proprietary microbial library of approximately 1,500 unique bacterial strains. Our strategy is as follows:
Our
Microbial Library and Microbial Drug Delivery Platform
Commensal
microorganisms reside on either the surface of the body or in the mucosa without harming human health. They act on the host’s immune
system to induce protective responses that prevent colonization and invasion by infectious pathogens, and thereby play a crucial role
in maintaining human health across a number of organ systems, particularly in the skin. Diverse communities of microorganisms populate
the skin, and a square centimeter can contain up to a billion microorganisms. These diverse communities of bacteria, fungi, mites and
viruses can provide protection against disease and form dynamic, yet distinct niches on the skin. Together, they make up the skin microbiome.
Many
genetically driven human diseases are systemically or partially related to the dysfunction of specific proteins that are missing or functionally
inert due to a mutation. Since approximately 1982, the biopharmaceutical industry has been genetically engineering recombinant proteins
in bacterial microorganisms for purposes providing therapies that mimic or support the body’s normally functioning proteins and
peptides. For decades, the vast majority of genetic engineering has been limited to primary E. coli and a handful of other bacterial
species, many of which can become pathogenic, inducing infection. In contrast, we have chosen to focus on S. epidermidis because
of its beneficial effects as a commensal, naturally occurring microbe on the skin. Our goal is to leverage our platform and internal
microbial library of over 60 bacterial species to engineer and deliver commensal skin bacteria directly to the target through the stratum
corneum of the skin. At these deeper levels in the skin, engineered microbes can produce the missing or inert proteins and thereby resolve
the underlying disease cause.
S.
epidermidis and Our Proprietary Microbial Library
S.
epidermidis is a strong therapeutic candidate species due to a number of well-described properties in the skin. S. epidermidis
is a gram-positive bacterium that is ubiquitous in the human skin and mucosal flora. As one of the earliest colonizers of the skin,
S. epidermidis plays an important role in cutaneous immunity and maintaining microbial community homeostasis. S. epidermidis
is known to have a beneficial relationship with its host as a skin commensal. The species has shown inhibition of the pathogenic
strain, Staphylococcus aureus, or S. aureus, as well as the strain Propionibacterium acnes, or P. acnes. S. epidermidis
induces keratinocytes to produce antimicrobial peptides and produces non-inflammatory T cell accumulation of both CD4+ and CD8+ T
cells via immune cell signaling. The T cell responses induce re-epithelization of the skin after injury, accelerating repair and wound
closure. For these reasons, we believe S. epidermidis offers several advantages as a vector for topical delivery of therapeutic
proteins.
In
their 2019 study, Stacy and Belkaid, world-leading experts in the skin microbiome, described S. epidermidis as “a ‘poster
child’ of the skin microbiota to illustrate the remarkable diversity of functions a microbe can exert on skin physiology and health.”
We believe that S. epidermidis has enormous strain diversity that can be exploited for therapeutic purposes. In the 2020 Oh Study,
Julia Oh’s lab reported that 1,482 unique strains of S. epidermidis were present on only five individuals. These strains
had not only significant genetic diversity but also large phenotypic diversity. We believe this large inter-strain variation among S.
epidermidis can be exploited. To that end, we collected samples from healthy volunteers to develop and characterize our own strain
library of S. epidermidis that includes over 900 unique S. epidermidis strains with potential for therapeutic use. We have
used this microbial library to screen against selected properties, including antimicrobial peptide secretion, S. aureus killing,
antibiotic sensitivity, and other therapeutically relevant characteristics. We have also collected other species in our library that
includes roughly 60 different skin commensal species that can also be screened for therapeutic purposes.
Figure
1. Representative Species in Azitra Microbial Library
Predictive
Analysis of Our Microbial Library
The
biopharmaceutical industry has seen success in identifying and isolating thousands of bacterial species. Yet only a relatively few such
species, believed to be less than 20, have been engineered to produce proteins or peptides with therapeutic potential. We have partnered
with Chemia Biosciences, Inc., a research and development group from Carnegie Mellon University. Through our collaboration with Chemia
Biosciences, we are able to use their proprietary genomic and peptidomic artificial intelligence and machine learning system, NRPMiner,
to develop and confirm natural product predictions of the proteins, peptides and small molecules that are generated by our proprietary
bacterial library. These predictions are confirmed via tandem mass spectroscopy or nuclear magnetic resonance. The information is then
fed back into the machine learning algorithm to refine the predictions. It can also be compared to existing 2D and 3D protein databases
to look for structural homology of our products to existing protein and peptide drugs. We believe our collaboration with the Carnegie
Mellon based team provides us with a scalable and modification tolerant way to accelerate therapeutic discoveries within our microbial
library.
The
Delivery of our Microbially Produced Drugs
The
delivery of genetically engineered proteins to the subcutaneous target sites is hindered by the natural barrier and the defenses of the
stratum corneum. This is the skin’s outermost layer, which acts as a barrier that prevents unwanted materials from entering the
body. To address this challenge, we have developed a proprietary process capable of facilitating protein delivery in a manner that bypasses
the normally impenetrable stratum corneum. The strategy utilizes the ability of particular microbes to infiltrate into the deeper layers
of the skin. There, the genetically modified microbes act as miniature factories to produce a therapeutic protein or molecule where it
is needed.
Our
protein delivery capability for treating skin conditions is based on engineering S. epidermidis and other microbes to secrete
proteins for drug delivery into the skin. We believe any number of proteins can be engineered and encoded by our bacteria to be produced
and delivered to the skin to treat a variety of skin conditions. We have also added key proprietary features in its platform to facilitate
protein delivery. A key feature of this system is that it bypasses the normally impenetrable skin barrier, a problem of topical protein
delivery. The skin barrier, composed of the stratum corneum, is sealed by enucleated keratinocytes and formed by numerous structural,
physical, and biochemical properties. Other transdermal delivery challenges arise due to susceptibility of protein to enzymatic digestion
by proteases and solubility and diffusion impediments due the hydrophobic surface and the layers of linked corneocytes comprising the
stratum corneum. We address this issue by leveraging the natural homing of S. epidermidis to layers below the stratum corneum.
In preclinical studies, we have shown that S. epidermidis homes to layers below the stratum corneum and delivers proteins into
the deeper epidermis.
To
expand upon our recombinant protein construction capabilities, we have acquired an exclusive license to proprietary technology that disguises
our genetically engineered DNA sequences to enable the production of proteins in previously intractable bacterial species. The technology
from the Fred Hutchinson Cancer Center or Fred Hutch, expands the universe of bacterial species that can be genetically modified. It
is based upon a restriction modification system-silent SyMPL toolset. The SyMPL technology platform makes human-made DNA invisible to
the bacteria’s defenses. In theory, the method can be applied to any type of bacteria. Our current product candidates do not incorporate
the SyMPL technology platform, but we expect that some or all of our future product candidates will do so.
Virtually
all strains of naturally occurring bacteria have defense mechanisms called restriction modification systems. The four types of restriction
modification systems recognize and defend against insertion of foreign DNA used to code recombinant proteins. Functional genetic engineering
of S. epidermidis (as well as S. aureus) has previously been limited due to the presence of Type I and IV restriction systems
in virtually all strains of these bacterial species. These restriction systems recognize methylated cytosine bases in DNA from standard
clone expansion systems (such as E. coli) and hinder incorporation of foreign DNA in the microbe. S. epidermidis was once
believed to be an “untransformable” strain due to its genetic intractability. However, we have been able to overcome S.
epidermidis’ defenses.
Current
genetic engineering processes add specific modifications to disguise human made DNA to trick the bacterium into thinking the intruder
is a part of its own DNA. This approach often takes considerable time and resources to try to match the right disguise to each particular
recognition motif. In contrast, Fred Hutch’s SyMPL technology platform is a systematic “stealth-by-engineering” approach
to overcome restriction modification defense systems. These restriction modification defense systems protect microbes from foreign DNA
and hinder the vast majority of genetic engineering approaches. The SyMPL technology platform is based on the ability to build minicircle
DNA plasmids which lack any of the target recognition motifs for the microbe’s defense systems to identify. The technology uses
the genome and methylome from a target bacteria’s genomic sequence to identify the restriction modification target motifs. They
are then eliminated from the nucleotide sequence of the genetic tool in silico. The resulting sequence is used to build the restriction
modification, SyMPL tools. These are propagated and then used for genetic transformations. Not only does the “stealth by engineering”
approach enable transformations in genetically intractable bacterial strains, but it has also been shown to drastically increase transformational
efficiency. Proof of principle experiments have shown improvements of over 10,000x in yields of genetically engineered colonies.
In
January 2022, Fred Hutch granted us an exclusive worldwide, royalty bearing license to the patent rights, and a non-exclusive worldwide,
royalty bearing license to the related know-how, for the SyMPL technology platform in all fields of use. For more information related
to the intellectual property acquired pursuant to the Fred Hutch license agreement, see the section titled “Business-Licenses
and Intellectual Property Rights.”
Our
Product Candidates
ATR-12
for the treatment of Netherton syndrome
ATR-12
is our proprietary and patent-pending drug candidate that contains a novel strain of S. epidermidis which has been genetically
modified to express and secrete an active fragment of the full-length protein called the lympho-epithelial Kazal-type related inhibitor,
or LEKTI. It has also been engineered to be auxotrophic, meaning that it requires the D-alanine nutrient in its formulation to survive
and propagate. This provides an additional level of safety against potential systemic infection. ATR-12 is a topical application intended
to address the underlying cause of Netherton syndrome, by replacing deficient LEKTI with an active segment of human recombinant LEKTI,
or rhLEKTI-D6, to counter the dysregulated skin serine protease activity observed in Netherton syndrome patients. The uncontrolled serine
protease activity leads to a profound skin barrier defect and the release of pro-inflammatory and pro-allergic mediators by keratinocytes
and immune cells. As of the date of this report, there is no known therapy for the cure or effective treatment of Netherton syndrome.
We believe ATR-12 has the potential to be the first therapy to effectively treat this disease of the skin. Based on the Barbati and Sun
Studies, we believe that ATR-12 represents a potential $250 million global sales opportunity by mid-2030.
Netherton
syndrome overview
Netherton
syndrome is a rare, autosomal recessive disease estimated to affect approximately one in every 200,000, but its prevalence may be underestimated
due to misdiagnosis. It is a chronic disease of the skin, characterized by severe inflammation, pruritus, scaling, red, and dehydrated
skin. Infants born with Netherton syndrome may suffer from a failure to thrive, and it has been reported that approximately one in ten
infants with Netherton syndrome die in their first year of life. Those that survive face a lifetime of skin disease challenges including
red, scaly skin, hair defects and an ongoing higher than normal risk for infection and allergy.
Netherton
syndrome is caused by mutations in the SPINK5 gene, which codes for the serine protease inhibitor Lympho-epithelial Kazal-type
related inhibitor, or LEKTI. The function of LEKTI is to inhibit enzymes in the epidermis, such as kallikreins 5, 7 and 14, or KLK5,
KLK7 and KLK14, which facilitate the shedding of skin cells in a process known as desquamation. When LEKTI is absent or has reduced activity,
excess shedding results and the skin is sensitive, open, and appears red and scaly. This is accompanied by the detachment of the stratum
corneum, leading to severe barrier dysfunction, dehydration and potential exposure to environmental agents, such as chemicals. Histopathology
and immunofluorescence staining of skin from a Netherton syndrome patient compared to healthy volunteer reveal an absence of LEKTI and
abnormalities in the skin such hyperkeratosis, epidermal thickening, and reduction of the basophilic keratohyalin granules.
Figure
2: Netherton syndrome pathophysiology and LETKI deficiency
Netherton
syndrome can range in severity from mild, such as red patchy areas of the skin, to life threatening. The degree of severity of the disease
correlates directly with the extent of loss of function of LEKTI on the skin. Netherton syndrome appears shortly after birth and is most
severe in the first year of an infant’s life. Survival beyond the first year is common in most cases, but the implications of the
disease are a lifelong challenge.
As
of the date of this report, there is no known cure for Netherton syndrome and treatment options are limited. Dermatologic interventions
to treat the severe skin manifestations of Netherton syndrome include moisturizers, topical corticosteroids, and calcineurin inhibitors,
all of which are limited in that they do not provide sustained remediation. Given the severity of disease during neonatal stages, fluid/electrolyte
and diet support are needed in addition to treating infections that often arise in these patients. While immunoglobulin therapy to address
immunodeficiencies associated with Netherton syndrome has shown limited success, a sustained remediation of skin barrier defects, induced
by dysregulation of LEKTI, is currently unavailable.
Our
solution – ATR-12 for the treatment of Netherton syndrome
ATR-12
is a topical ointment containing an S. epidermidis strain, SE351, that has been genetically modified to express LEKTI from the
chromosome. The SE351 strain has also been engineered to be auxotrophic for D-alanine, which means it cannot survive without the exogenous
D-alanine nutrient provided in the formulation. ATR-12 is intended to address the underlying cause of Netherton syndrome by replacing
deficient/dysfunctional LEKTI with an active, recombinant, human fragment of the full-length protein, rhLEKTI-D6. The treatment consists
of applying ATR-12 to affected areas. rhLEKTI-D6 produced by SE351 will counter the dysregulated skin serine protease activity observed
in Netherton syndrome patients, to restore skin barrier function and reduce inflammation. We believe that among the important advantages
of this approach is the potential to deliver rhLEKTI-D6 over time into the lower layers of the stratum corneum and epidermis, the primary
sites of dysregulation in patients with Netherton syndrome.
The
S. epidermidis strain selected to deliver rhLEKTI-D6 to the skin, SE351, was selected from our proprietary strain collection.
This strain is characterized by low virulence and is a non-biofilm forming host strain. To further enhance the safety of ATR-12, we have
engineered the microbe for D-alanine to be auxotrophic. The key advantage to engineering auxotrophy is the ability to control growth
and halt potential infection. Full length human LETKI, a 15-domain protein (145 kDa), is too large for reliable bacterial expression
and secretion. Given evidence that fragments of the full-length protein are sufficient to counter the dysregulated skin serine protease
activity observed in Netherton syndrome patients, we selected D6 for recombinant expression in S. epidermidis.
In
May 2020, we received Rare Pediatric Disease Designation from the FDA for ATR-12. As a result, if we are able to obtain approval for
ATR-12 from the FDA in pediatrics, we will be eligible to receive a Priority Review Voucher, which can be used by us to obtain FDA review
of a New Drug Application or Biologics License Application for this or another drug candidate in an expedited period of six months. These
vouchers are often transferable, and some have been sold for over $100 million.
Preclinical
data for ATR-12
As
of the date of this report, we have conducted several in vivo and ex vivo experiments that collectively support the potential
efficacy of ATR-12 as a disease modifying therapy for patients with Netherton syndrome. The genetically engineered strain of S. epidermidis
used in the formulated ATR-12 drug product is called SE351. In 2021, we conducted in vitro studies to assess the ability of exogenously
applied SE351 to colonize sterile reconstructed human epidermis. SE351 successfully colonized the reconstructed human epidermis and,
furthermore, no S. epidermidis colonization occurred without D-alanine present, confirming that D-alanine must be supplied for
SE351 growth on skin. These data suggest that SE351 is capable of colonizing human skin, and that colonization can be controlled with
D-alanine supplementation.
Additionally,
in vitro studies using tape stripped skin from healthy volunteers spiked with KLK5 to mimic Netherton syndrome showed that diluted
SE351 culture supernatant dose-dependently inhibited trypsin-like activity (KLK5 activity). Trypsin-like activity in the Netherton syndrome
surrogates returned to normal healthy levels when a solution containing ≥0.5% of the SE351 culture supernatant was added.
Figure
3: In Vitro Netherton Syndrome Model Using Human Skin Tape Strip Extracts Supplemented with Disease Level KLK5 Activity
In
addition, results from an ex vivo pig skin model demonstrate that a single topical dose of ATR-12 at 3 dose levels led to secretion
of active rhLEKTI-D6. Finally, data from an ex vivo healthy human skin model demonstrate that a single topical dose of ATR-12
administered at the maximum intended dose of 109 CFU/g delivers enough active rhLEKTI-D6 into the lower layers of the stratum
corneum to effectively inhibit the protease, kallikrein 5 (“KLK5”), at levels typically observed in patients with Netherton
syndrome.
In
particular, data from an ex vivo healthy human skin model demonstrate that a single topical dose of ATR-12 administered at the
maximum intended dose of 109 Colony Forming Units per gram (CFU/g) delivers enough active rhLEKTI-D6 into the lower layers
of the stratum corneum to effectively inhibit KLK5 at levels typically observed in patients with Netherton syndrome. Amounts of LEKTI
activity in layers extracted were from tape strip samples from ex vivo human skin treated with placebo and ATR-12. The collection
proceeded right after skin application (T = 0 hours, white bars) or after 8 hours incubation at 30°C (T = 8 hours, black bars). Total
LEKTI activity levels were obtained by adding the pmol amounts through layers 1 to 30 of placebo (grey bars) or ATR-12 (black bars) samples.
Data are the average ± a standard deviation (SD) of 3 independent samples (N = 3). Statistical analysis was carried out using
two-way ANOVA, and ** represents p <0.01.
Figure
4: LETKI activity in Placebo and ATR-12-Treated Skin Samples Following 0- and 8-hour Incubation
In
addition, a single therapeutic dose of ATR-12 over 24-hour incubation yielded ~2-fold higher LEKTI activity compared to 8-hour incubation.
This indicates continuous production of functional rhLEKTI-D6 by ATR-12 over time.
Figure
5: LETKI activity in Placebo and ATR-12-Treated Skin Samples Following 24-hour Incubation
In
vitro stoichiometry work performed by Azitra indicates that KLK5 requires 2 molar equivalents on the rhLEKTI-D6 protein for inhibition
(as measured by IC50). Historical studies have indicated that Netherton syndrome patients to show up to ~6 fold the amount
of KLK5 that the amounts found in normal skin. This equates to 60 pmol of KLK5 per given area. The studies shown above indicate that
SE351 delivered 350 pmol of rhLEKTI-D6 at 8 hours and it delivered 700 pmol of rhLEKTI-D6 at 24 hours. This represents a 5- to 11-fold
amount above the predicted amount required for activity.
Figure
6: In vitro stoichiometry of LEKTI-D6 to inhibit KLK5
In
2022, we obtained pre-IND correspondence with the FDA for purposes of discussing our proposed regulatory pathway for ATR-12 and obtaining
guidance from the FDA on the preclinical plan leading to the filing and acceptance of an IND application for ATR-12. In December 2022,
we filed an IND for a first-in-human trial of ATR-12 in Netherton syndrome patients. Our IND proposes a Phase 1b multi-center, randomized,
double-blind, single dose level, placebo-controlled clinical study of ATR-12 in patients with Netherton syndrome. The primary endpoint
is safety and secondary endpoints will include signals of efficacy and pharmacokinetics. Exploratory endpoints include immune and inflammatory
mechanism biomarkers. On January 27, 2023, we received notification from the FDA that the “study may proceed” with respect
to the proposed Phase 1b clinical trial with initial safety results expected in the second half of 2024.
ATR-04
for the Treatment of EGFRi-Associated Rash
ATR-04
is our proprietary and patent-pending drug candidate that contains a novel strain of S. epidermidis, SE484, which has been genetically
modified to be auxotrophic tor D-alanine. ATR-04 is a topical application intended to address the papulopustular rash experienced by
cancer patients undergoing epidermal growth factor receptor inhibitor, or EGFRi, targeted therapy. We believe this product candidate
represents a potential $1 billion global sales opportunity by 2030.
EGFRi-Associated
Rash Overview
Targeted
cancer therapies have produced significant treatment advances for patients diagnosed with a variety of tumor types, but they are also
associated with unique dermatologic toxicities that may hamper treatment efforts and cause significant physical and psychological discomfort
for patients. Prevention and management of these toxicities may allow patients to tolerate treatments better, remain on therapy longer
and thereby potentially receive maximum clinical benefit from the drug. One such class of targeted cancer therapy includes EGFR inhibitors.
EGFR is a protein on the surface of cells that helps them grow and divide. It is also a key factor in certain malignancies, and its activity
enhances tumor growth, invasion, and metastasis. While systemic exposure to EGFRi agents suppresses EGFR at the target cancer site, it
also suppresses EGFR throughout the body. In the skin, EGFR regulates multiple keratinocyte functions including proliferation, adhesion
and migration, survival, and differentiation. Consequently, inhibition of EGFR in the skin results in adverse skin reactions, which make
it difficult for patients to stay on these effective therapies.
Dermatologic
toxicities are amongst the most prevalent side effects seen with EGFRi-targeted therapies. The papulopustular rash is the earliest and
most common dermatologic adverse event of EGFRi treatment, often occurring in 50-80% of patients, depending on the drug, the cancer being
treated, and the treatment regimen. The appearance of the papulopustular rash is a dose-dependent skin drug reaction, which usually develops
in the first one to two weeks and peaks at three to four weeks on therapy. The intensity of the rash may start to decrease after two
weeks but can persists over the entire course of EGFRi treatment. The rash is characterized clinically as tender erythematous papules,
which after a few days evolve into pustules and then into crusts on the face, scalp, chest, and upper back. The rash is often accompanied
by severe xerosis and at times serious cutaneous bacterial infection, primarily S. aureus. While most skin rash episodes are considered
mild to moderate, some are severe. In many cases the rash leads to severe quality of life issues and can even lead to the interruption
or cessation of the EGFRi treatment.
The
current standard of care for rash treatment in patients undergoing EGFRi treatment varies depending on the rash severity. Typically,
skin moisturizers, topical steroids and doxycycline are administered prophylactically from the start of EGFRi therapy and are continued
throughout the entire treatment period. If the rash continues to advance, oral steroids and/or antibiotics are administered. However,
there are known systemic adverse events associated with these adjunctive therapies, and we believe that physicians and patients try to
limit their use. In addition, research indicates that oral antibiotics lead to a disruption in the gut microbiome, which in turn leads
to a decrease in the effectiveness of targeted therapies, including EGFRi. Given the high incidence rate of rash that continues with
these patients, as well as the concerns related to potential impacts of antibiotics on these therapies, we believe there is a clear unmet
medical need for additional safe and effective adjunctive therapies for addressing papulopustular skin rash.
Based
on studies conducted by Satoh and Lichtenberger, the cytokine, Interleukin-36 gamma, or IL-36γ, and S. aureus are linked
to and play a significant role in the rashes experienced by patients treated with EGFRis. IL-36γ, is elevated in the skin of patients
undergoing EGFRi therapy. In 2020, Satoh used gene expression profiling to identify IL-36γ as a candidate driver of EGFRi/MEKi
skin toxicity. It is induced by EGFR inhibition and Cutibacterium acnes that synergistically induce IL-36γ in the skin and
subsequently IL-8 and NF-κB, which leads to cutaneous neutrophilia. IL-36γ could be a key therapeutic target in treating
EGFRi-induced rashes. In 2013, Lichtenberger noted high rates (70%) of bacterial infection in patients (n=107) on EGFRi and proposed
a mechanism of EGFR ablation leading to S. aureus-induced infection in mice. The study noted a majority of the patients were positive
with S. aureus (54%). Mechanistically, the authors noted that EGFRi therapy impairs host defense: impaired expression of antimicrobial
peptides, especially against S. aureus; and lowered expression of tight junctions. Also, the study revealed EGFR ablation leads
to skin barrier defects as well as impaired cutaneous immune response and cytokine expression.
Our
solution – ATR-04 for the treatment of EGFRi-associated rash
ATR-04
is our formulated, drug product candidate for the treatment of EGFRi associated rash. It includes a novel auxotrophic strain of S.
epidermidis strain that was selected from our microbial strain library, based on desired properties of IL-36γ reduction and
inhibition of S. aureus and its biofilms. The current lead strain is called SE484. We then genetically engineered SE484 to be
auxotrophic tor D-alanine and to create our drug product candidate, ATR-04.
SE484
was chosen from our microbial library based on key characteristics such as inhibition of IL-36γ as well as its effect against S.
aureus. Together, we expect these mechanisms of action to lead to significant reductions in rash severity among patients undergoing
EGFRi therapy.
We
believe that ATR-04 has the potential to address current limitations to treatment of EGFRi-associated rash:
Preclinical
data of ATR-04
We
screened over 100 strains based on safety (e.g., lack of antibiotic resistance) and biological activity (e.g., IL-36γ inhibition
and activity versus S. aureus) and designated SE484 as our lead candidate strain. After engineering this strain to be auxotrophic
for D-alanine, we nominated this candidate for use as the active microbe in the ATR-04 drug product formulation.
EGFRi-associated
rash is a condition that is characterized by redness, itchiness, and irritation of the skin, and is induced by certain cancer treatments.
It was shown, by gene expression profiling (Satoh et al 2020), that skin biopsy samples from patients suffering from EGFRi-associated
rash had elevated levels of cytokines IL-36γ (IL-36 gamma) and IL-8 compared to skin from healthy donors. These are proinflammatory
cytokines that are signaling molecules of the immune system that increase the intensity of an immune response and can cause tissue damage.
In addition to elevated cytokine levels, EGFRi-treated patients have impaired skin barrier function. Infection with pathogenic strains
of S. aureus exacerbates the EGFRi-induced cutaneous disease.
Our
work was focused on identifying a Staphylococcus epidermidis strain, a skin commensal, that reduces IL-36γ levels and thus
reduces the rash associated with EGFRi. We reasoned that many species of bacteria that live on human skin probably survive there because
they have evolved ways to reduce the human immune system’s response to their presence, and we might be able to identify a resident
human skin commensal bacteria that survives thereby specifically reducing IL-36γ activity.
To
identify such a Staphylococcus epidermidis strain, we developed an in vitro assay to measure the levels of IL-36γ
and IL-8 that are produced by human skin cells that are grown in culture. The cell line we used is called HaCaT and is derived from human
keratinocytes, which are a cell type in the epidermis. In order to simulate the inflammatory phenotype of EGFRi-related disease of the
skin, HaCaT cells were stimulated with an immunostimulant, polyinosinic:polycytidylic acid, or poly I:C, which causes them to secrete
elevated levels of IL-36γ and IL-8. This assay was used to identify and evaluate the ability of different S. epidermidis
strains to lower IL-36γ and IL-8 levels.
We
screened over 100 strains based on safety (e.g., lack of antibiotic resistance) and biological activity (IL-36γ inhibition and
activity against S. aureus) and designated SE484 as our lead candidate strain. After engineering this strain to be auxotrophic
for D-alanine, so that it will grow only if provided with D-alanine, we also eliminated an anti-biotic resistance gene. Then, we nominated
this candidate for use as the active microbe in the ATR-04 drug product formulation.
To
test the ability of SE484 to reduce IL-36γ on a skin-like model, erlotinib was used to induce IL-36γ secretion on reconstructed
human epidermis, or RHE. Simultaneous application of SE484 with erlotinib reduced IL-36γ to a level comparable RHE that had not
been treated with erlotinib, showing that SE484 acts on a skin-like model to reduce this pro-inflammatory cytokine. Figure 7 shows the
results of two experiments to measure IL-36γ reduction by SE484. In Figure 7A, a cell-free supernatant (CFS) from a culture of
SE484 was applied to RHE, while in Figure 7B live cells of SE484 (either 1x108 CFU or 1x109 CFU) were applied to
RHE to measure the ability of SE484 to reduce IL-36γ. In both cases, cell-free supernatant or SE484 cells, erlotinib-induced IL-36γ
levels were reduced.
Figure
7. The anti-IL-36g activity of SE484 on RHE. Reconstructed human epidermis, or RHE, was treated for 72 hours with 1 mM erlotinib
alone or with cell-free supernatant (CFS) from SE484 culture (A), or with approximately 108 or 109 CFU of SE484
(B). RHE feeding media was then assayed by ELISA for IL-36γ levels.
Figure
8. IL-8 induction by Poly I:C is Reduced by CS of SE484. The presence of culture medium from SE484 prevents the stimulation and release
of IL-8 by poly I:C (red arrow). An inhibitor of poly I:C is used as control (blue arrow). Data are representative of two independent
experiments. CS = culture supernatant.
Figure
8 shows the inhibitory effect of SE484 culture supernatant on the induction of IL-8 by poly I:C. Similar to IL-36γ, when poly I:C
is added to HaCaT cells, IL-8 is also secreted, several fold above background (as seen in untreated HaCaT and SE484-treated HaCaT). However,
in the presence of SE484, lower levels of IL-8 were detected, thus further demonstrating the efficacy of SE484 to inhibiting the proinflammatory
pathway involved in EGFRi-related rash.
Our
results show that culture media of S. epidermidis strain SE484, which was isolated from a healthy human volunteer, can reduce
the level of IL-36γ and IL-8 produced by HaCaT cells (Figure 7 and Figure 8, respectively) and thus help in the treatment of EGFRi-
related rash. In addition to its anti-IL-36γ property, SE484 also has broad activity against different methicillin-resistant S.
aureus, or MRSA, strain types as well as methicillin sensitive S. aureus, or MSSA. The ability of SE484 to reduce IL-36γ/IL-8
levels as well as its activity against S. aureus and the engineered D-alanine auxotrophy enabled us to nominate strain SE484 for
use as the active microbe in the ATR-04 drug product formulation to form the basis of a treatment and reduce the severity of EGFRi rash.
We
have also shown that SE484 leads to in vitro inhibition of known virulent strains USA300, which is resistant to methicillin, and
MSSA, which is sensitive to methicillin. The following data show that ATR-04 reduces the ability of the pathogenic S. aureus bacterial
species to grow and instigate infections that are seen in patients with EGFRi rash.
Figure
9. Epidermin-expressing SE484 kills S. aureus with similar activity as mupirocin on in vitro agar plates.
We
are proposing an initial study of SE484 in the ATR-04 formulation in patients. It is contemplated to be a Phase 1b multi-center, randomized,
double-blind, single-dose, placebo-controlled trial in patients with colorectal or head and neck cancer who are initiating EGFRi therapies.
The primary endpoint is safety, and secondary endpoints will include efficacy and Quality of Life, or QoL We are planning to submit an
IND by mid-2024. Subject to FDA clearance of our IND, we expect to commence our Phase 1b clinical trial in fourth quarter of 2024.
ATR-01
for the treatment of ichthyosis vulgaris
ATR-01
is our drug product candidate intended to treat ichthyosis vulgaris. The program is currently investigating a proprietary and patent-pending
novel engineering segment of human filaggrin protein. ATR-01 is being developed as a topical application intended to address ichthyosis
vulgaris, a chronic scaly skin disease with an estimated incidence and prevalence of 1 in 250, which gives a total patient population
of 1.3 million in the United States. Ichthyosis vulgaris is caused by loss-of-function mutations in the gene encoding filaggrin Using
synthetic biology tools for protein engineering, we attached a cell penetrating peptide to filaggrin, which helps facilitate deeper skin
delivery for filaggrin. This is designed to overcome the impenetrability of the skin barrier, which would otherwise limit topical protein
delivery.
Ichthyosis
vulgaris overview
Ichthyosis
vulgaris, or IV, is a chronic, xerotic, scaly skin disease with an estimated incidence and prevalence of 1 in 250, which gives a total
patient population of 1.3 million in the United States. Clinical features of IV usually appear at around 2 months of age and include
generalized xerosis and fine, white to gray scales that are prominent on the abdomen, chest, and extensor surfaces of the extremities.
Although rare, some IV patients also experience hypohidrosis and heat intolerance. The pathogenesis of IV has long been identified as
a decrease in the size or number, or even a complete absence of, epidermal keratohyaline granules. In addition, patients with IV are
at increased risk for atopic dermatitis, asthma and allergies.
Ichthyosis
vulgaris is an autosomal semidominant disease caused by loss-of-function mutations in the gene encoding filaggrin. Filaggrin is an essential
structural protein that is derived from profilaggrin, which breaks down into individual filaggrin units in the stratum corneum. These
reinforce the skin barrier by binding to keratins and other intermediate filament proteins in the keratinocyte cytoskeleton. Many studies
have identified loss-of-function mutations in FLG in IV patients, and these mutations are associated with disorganized keratin
filaments, skin barrier defects and microfractures in the stratum corneum leading to enhanced percutaneous allergen sensitization. Moreover,
filaggrin and its breakdown products have significant additional functions in the skin including moisturizing the skin (via hygroscopic
amino acids or “natural moisturizing factors”), effecting production of antimicrobial molecules (particularly against S.
aureus) and maintaining both a beneficial lipid profile and pH in the skin.
There
are few effective therapies for the treatment of IV. Current treatment options for IV include primarily topical water evaporation suppressants
(e.g., sodium chloride, urea, lactic acid, salicylic acid), and, to a lesser extent, moisturizers (e.g., glycerol, propylene glycol,).
Topical retinoids may also be prescribed in an effort to slow the body’s production of skin cells. However, long-term retinoid
use is not ideal. Of particular concern is the teratogenic effect of all retinoids, which limits their use in women of child-bearing
potential. Chronic toxicities from long term therapy with retinoids may result in skeletal abnormalities. Furthermore, the chronic use
of retinoids in children may inhibit their growth. Notably, many patients with IV experience a significantly reduced quality of life,
due to self-consciousness and social embarrassment, and see a negative impact on domestic life, educational/professional lives and even
leisure/sports activities.
Our
solution – ATR-01 for the treatment of ichthyosis vulgaris
It
is now known that IV is caused by loss-of-function mutations in the gene encoding filaggrin, leading to disorganized keratin filaments,
skin barrier defects and microfractures in the stratum corneum, and resulting in enhanced percutaneous allergen sensitization as well
as bacterial and viral skin infection. We are developing ATR-01 as a novel treatment modality for IV that directly addresses the disease
pathophysiology. ATR-01 consists of FLG9-10 functional unit of the human FLG protein with an attached cell penetrating peptide. The goal
is to supplement the skin with stable delivery of hFLG via topical application and deeper skin penetration with a cell penetrating peptide.
Preclinical
data for ATR-01
Human
FLG units (domains 9-10) were evaluated on human skin explants (from plastic surgery) ex vivo. The skin barrier of the explants
was compromised by repeated tape-stripping such that transepidermal water loss, or TEWL values were significantly increased compared
to normal skin. As shown in the example below, daily topical application of a human filaggrin unit with a cell penetrating peptide for
five days resulted in a dose-dependent (not shown) rapid improvement in TEWL, suggesting improved skin barrier. Thus, topical delivery
of a recombinant hFLG unit coupled with a cell penetrating peptide can improve/accelerate the repair of damaged human skin barrier.
Figure
10: Topical filaggrin application on tape stripped ex vivo human skin following human filaggrin application.
Lastly,
we have shown that topical filaggrin can improve skin barrier defects in filaggrin-deficient mouse models. Recombinant mouse filaggrin,
or mFlg, was applied to the tail of flaky tail, or FT, mice (a mouse model that has a knockout in the filaggrin gene) once daily
for 2 weeks (50 μg total protein/tail sections or 15.2 μg total protein/cm2). Daily treatment with mFlg significantly
improved transepidermal water loss in FT mice when treated (FT+FLG group) compared to vehicle (“baseline” group). The third
group on the X-axis is a normal, control, wild type group (WT) that does not have the filaggrin gene knocked out. Treatment of
damaged mouse skin with recombinant mFlg combined to a cell penetrating peptide improved damaged mouse skin barrier (Figure A below).
Additionally, histological analysis of the epidermis of the mouse tail sections showed tendency for improved stratum corneum thickness
with mFlg treatment (Figure B below). In this graph, the Y-axis represents thickening of the stratum corneum, which starts to fractionate
or scale after growing past a normal thickness. Treatment with mFlg improved the thickness in four of six of the samples.
Other
Potential Product Candidates
Beyond
our three lead product candidates, our goal is to develop a broad portfolio of product candidates focused on expanding the application
of our platforms for precision dermatology. We have a proprietary platform for discovering and developing therapeutic products for precision
dermatology. Our platform is built around a microbial library comprised of approximately 1,500 unique bacterial strains to allow screening
for unique therapeutic characteristics and utilizes microbial genetic technology that analyzes, predicts and engineers the proteins,
peptides and molecules made by skin microbes. Our ability to genetically engineer intractable microbial species is uniquely leveraged
by our exclusive license to the SyMPL technology.
Bayer
Joint Development Agreement
In
December 2019, we entered into a Joint Development Agreement, or JDA, with Bayer pursuant to which we agreed to the joint development
of certain strains selected from our proprietary microbial library. We and Bayer have agreed to cooperate in the identification and in
vitro and ex vivo characterization of microbial strains for topical formulations. Bayer paid us a one-time $150,000 payment
upon execution of the JDA and has agreed to reimburse us for our development costs. In October 2021, Bayer expanded the option agreement
and paid us $375,000 for additional characterization work. We have granted Bayer an option to acquire an exclusive royalty bearing license
for up to six strains subject to development activities under the JDA, including an exclusive royalty bearing license to any related
patent rights. After screening through hundreds of strains, we and Bayer have selected two particular strains to move forward with in
vitro and ex vivo characterization, which we intend to develop as potential over-the-counter cosmetic products. We completed
the characterization work and delivered the data to Bayer in the fourth quarter of 2023, at which time Bayer has 12 months to exercise
its option to license the strains and related patents. Upon the conclusion of the characterization studies and our delivery of the data
to Bayer, the JDA will end, but Bayer has the option to license the strains and related patents. As of the date of this report, we have
not negotiated a commercial license agreement with Bayer and we will not do so until such time, if ever, as Bayer exercises its option
to acquire an exclusive royalty bearing license.
In
September 2020, Bayer’s venture capital group, LEAPS by Bayer, purchased $8 million of our Series B preferred stock.
Sales
and Marketing
Given
our stage of development, we have not yet established a commercial organization or distribution capabilities. We plan to build focused
capabilities in the United States to commercialize our development programs focused on live biotherapeutic products and recombinant proteins
for the treatment of skin diseases, where we believe the patient populations and medical specialists for the indications we are targeting
are sufficiently concentrated to allow us to effectively promote our products, if approved for commercial sale, with a targeted sales
team. In other markets for which commercialization may be less capital efficient for us, we may selectively pursue strategic collaborations
with third parties in order to maximize the commercial potential of our product candidates.
Manufacturing
We
do not own or operate manufacturing facilities for the production of our current product candidates. We currently rely on third-party
contract manufacturers for all of our required raw materials, manufacturing devices and active pharmaceutical ingredients and for our
preclinical research and clinical trials. Although we are able to manufacture finished product in our Groton Connecticut facility for
our clinical trials, we will rely on third parties for the manufacture of our finished product for commercial sale. We do not have long-term
agreements with any of these third parties. We also do not have any current contractual relationship for the manufacture of Phase 3 clinical
trials or commercial supplies. We intend to enter into agreements with third-party contract manufacturers and one or more backup manufacturers
for future production. We are analyzing the feasibility of building manufacturing capabilities for future development and commercial
quantities of any products that we develop. Such products will need to be manufactured in facilities, and by processes, that comply with
the requirements of the FDA and the regulatory agencies of other jurisdictions in which we are seeking approval.
Competition
The
biopharmaceutical industry is characterized by rapidly advancing technologies, intense competition and a strong emphasis on proprietary
drugs. While we believe that our knowledge, experience and scientific resources provide us with competitive advantages, we face potential
competition from many different sources, including other biopharmaceutical companies, academic institutions and governmental agencies
as well as public and private research institutions. Any drug candidates that we successfully develop and commercialize will compete